Prague Stringology Conference 2015

Tamanna Chhabra, M. Oğuzhan Külekci and Jorma Tarhio

Alternative Algorithms for Order-Preserving Matching

The problem of order-preserving matching is to find all substrings in the text which have the same relative order and length as the pattern. Several online and one offline solution were earlier proposed for the problem. In this paper, we introduce three new solutions based on filtration. The two online solutions rest on the SIMD (Single Instruction Multiple Data) architecture and the offline solution is based on the FM-index scheme. The online solutions are implemented using two different SIMD instruction sets, SSE (streaming SIMD extensions) and AVX (Advanced Vector Extensions). Our main emphasis is on the practical efficiency of algorithms. Therefore, we show with practical experiments that our new solutions are faster than the previous solutions.

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